Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 CDCA4P2-201ENST00000441182 718 ntBASIC13.55□□□□□ -0.24
HLA-DQA1P01909 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DQA1P01909 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 AC133963.1-201ENST00000504166 1679 ntBASIC13.54□□□□□ -0.24
HLA-DQA1P01909 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 AC093787.1-201ENST00000450396 207 ntBASIC13.54□□□□□ -0.24
HLA-DQA1P01909 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 AC105036.2-201ENST00000569468 176 ntBASIC13.54□□□□□ -0.24
HLA-DQA1P01909 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 NXN-202ENST00000537628 1340 ntTSL 3 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 TSPY26P-202ENST00000565928 3884 ntBASIC13.54□□□□□ -0.24
HLA-DQA1P01909 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.54□□□□□ -0.24
HLA-DQA1P01909 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DQA1P01909 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.53□□□□□ -0.24
HLA-DQA1P01909 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 PHGDH-209ENST00000641074 1780 ntBASIC13.53□□□□□ -0.24
HLA-DQA1P01909 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 AL355472.2-201ENST00000422958 438 ntBASIC13.53□□□□□ -0.24
HLA-DQA1P01909 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 AF201337.1-201ENST00000520239 748 ntBASIC13.53□□□□□ -0.24
HLA-DQA1P01909 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DQA1P01909 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms