Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
RAPGEF3O95398 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 HNRNPFP1-201ENST00000391730 1133 ntBASIC26.74■■□□□ 1.87
RAPGEF3O95398 COX5BP2-201ENST00000392354 334 ntBASIC26.74■■□□□ 1.87
RAPGEF3O95398 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 TERF1P3-201ENST00000505638 1227 ntBASIC26.74■■□□□ 1.87
RAPGEF3O95398 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC26.74■■□□□ 1.87
RAPGEF3O95398 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 AC007064.4-201ENST00000637740 555 ntBASIC26.74■■□□□ 1.87
RAPGEF3O95398 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
RAPGEF3O95398 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 S100A2-206ENST00000497140 697 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 DUX4L17-201ENST00000557360 1267 ntBASIC26.73■■□□□ 1.87
RAPGEF3O95398 NAA60-208ENST00000570819 833 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 AC068137.2-201ENST00000605408 478 ntBASIC26.73■■□□□ 1.87
RAPGEF3O95398 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 AC009093.7-201ENST00000623853 1223 ntBASIC26.73■■□□□ 1.87
RAPGEF3O95398 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
RAPGEF3O95398 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC26.73■■□□□ 1.87
RAPGEF3O95398 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
RAPGEF3O95398 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
RAPGEF3O95398 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
RAPGEF3O95398 AL161938.1-201ENST00000569833 2180 ntBASIC26.72■■□□□ 1.87
RAPGEF3O95398 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC26.72■■□□□ 1.87
RAPGEF3O95398 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.71■■□□□ 1.87
RAPGEF3O95398 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 SNCG-201ENST00000348795 684 ntTSL 2 BASIC26.71■■□□□ 1.87
RAPGEF3O95398 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC26.71■■□□□ 1.87
RAPGEF3O95398 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC26.71■■□□□ 1.87
RAPGEF3O95398 AL627223.1-201ENST00000416693 442 ntBASIC26.71■■□□□ 1.87
RAPGEF3O95398 AC055876.3-201ENST00000431496 288 ntBASIC26.71■■□□□ 1.87
RAPGEF3O95398 TSPY16P-201ENST00000449843 468 ntBASIC26.71■■□□□ 1.87
RAPGEF3O95398 SIGLEC30P-201ENST00000455569 941 ntBASIC26.71■■□□□ 1.87
RAPGEF3O95398 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 AC138649.4-201ENST00000612222 287 ntBASIC26.71■■□□□ 1.87
RAPGEF3O95398 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
RAPGEF3O95398 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC26.71■■□□□ 1.87
RAPGEF3O95398 AC006116.8-202ENST00000587620 1550 ntBASIC26.71■■□□□ 1.87
RAPGEF3O95398 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
RAPGEF3O95398 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
RAPGEF3O95398 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
RAPGEF3O95398 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
RAPGEF3O95398 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC26.7■■□□□ 1.87
RAPGEF3O95398 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.86
RAPGEF3O95398 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RAPGEF3O95398 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC26.7■■□□□ 1.86
RAPGEF3O95398 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms