Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.21■□□□□ 0.51
USP1O94782 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.21■□□□□ 0.51
USP1O94782 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.21■□□□□ 0.51
USP1O94782 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
USP1O94782 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
USP1O94782 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.21■□□□□ 0.51
USP1O94782 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
USP1O94782 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 PVRIG2P-201ENST00000435460 978 ntBASIC18.2■□□□□ 0.5
USP1O94782 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
USP1O94782 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.2■□□□□ 0.5
USP1O94782 KRT18P22-201ENST00000402024 1347 ntBASIC18.2■□□□□ 0.5
USP1O94782 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.2■□□□□ 0.5
USP1O94782 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
USP1O94782 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
USP1O94782 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
USP1O94782 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.19■□□□□ 0.5
USP1O94782 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.19■□□□□ 0.5
USP1O94782 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.19■□□□□ 0.5
USP1O94782 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
USP1O94782 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.19■□□□□ 0.5
USP1O94782 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USP1O94782 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
USP1O94782 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USP1O94782 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.18■□□□□ 0.5
USP1O94782 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms