Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
VPS4BO75351 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS4BO75351 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS4BO75351 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 AC009065.1-201ENST00000564055 1225 ntBASIC17.65■□□□□ 0.42
VPS4BO75351 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS4BO75351 AC069148.1-201ENST00000608741 768 ntBASIC17.65■□□□□ 0.42
VPS4BO75351 AC011558.1-201ENST00000623459 338 ntBASIC17.65■□□□□ 0.42
VPS4BO75351 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS4BO75351 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS4BO75351 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 AC006116.8-202ENST00000587620 1550 ntBASIC17.65■□□□□ 0.42
VPS4BO75351 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS4BO75351 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
VPS4BO75351 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VPS4BO75351 AC093010.1-201ENST00000473625 1624 ntBASIC17.65■□□□□ 0.42
VPS4BO75351 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.64■□□□□ 0.42
VPS4BO75351 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS4BO75351 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.64■□□□□ 0.42
VPS4BO75351 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.64■□□□□ 0.42
VPS4BO75351 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS4BO75351 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS4BO75351 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VPS4BO75351 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS4BO75351 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
VPS4BO75351 AL671277.2-201ENST00000458060 996 ntBASIC17.64■□□□□ 0.41
VPS4BO75351 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 CLEC4GP1-201ENST00000596555 870 ntBASIC17.64■□□□□ 0.41
VPS4BO75351 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
VPS4BO75351 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.64■□□□□ 0.41
VPS4BO75351 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
VPS4BO75351 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VPS4BO75351 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4BO75351 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 PRORSD1P-202ENST00000563365 2154 ntBASIC17.63■□□□□ 0.41
VPS4BO75351 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4BO75351 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4BO75351 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4BO75351 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS4BO75351 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4BO75351 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS4BO75351 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4BO75351 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.63■□□□□ 0.41
VPS4BO75351 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
VPS4BO75351 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms