Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSX4O60224 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.21
SSX4O60224 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.33■□□□□ 0.21
SSX4O60224 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SSX4O60224 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SSX4O60224 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.33■□□□□ 0.21
SSX4O60224 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
SSX4O60224 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SSX4O60224 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.33■□□□□ 0.2
SSX4O60224 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SSX4O60224 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.33■□□□□ 0.2
SSX4O60224 AC139887.4-201ENST00000607877 719 ntBASIC16.33■□□□□ 0.2
SSX4O60224 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
SSX4O60224 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SSX4O60224 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.33■□□□□ 0.2
SSX4O60224 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SSX4O60224 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.33■□□□□ 0.2
SSX4O60224 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.33■□□□□ 0.2
SSX4O60224 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SSX4O60224 AL596257.1-201ENST00000641463 2694 ntBASIC16.32■□□□□ 0.2
SSX4O60224 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.32■□□□□ 0.2
SSX4O60224 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 AC117947.1-201ENST00000427448 529 ntBASIC16.32■□□□□ 0.2
SSX4O60224 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.32■□□□□ 0.2
SSX4O60224 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.32■□□□□ 0.2
SSX4O60224 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.32■□□□□ 0.2
SSX4O60224 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 Z85996.1-201ENST00000494644 937 ntBASIC16.32■□□□□ 0.2
SSX4O60224 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.32■□□□□ 0.2
SSX4O60224 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.32■□□□□ 0.2
SSX4O60224 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.32■□□□□ 0.2
SSX4O60224 AL160286.2-201ENST00000567150 934 ntBASIC16.32■□□□□ 0.2
SSX4O60224 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.32■□□□□ 0.2
SSX4O60224 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.32■□□□□ 0.2
SSX4O60224 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSX4O60224 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SSX4O60224 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSX4O60224 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.31■□□□□ 0.2
SSX4O60224 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms