Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 AC112907.2-201ENST00000448639 330 ntBASIC19.26■□□□□ 0.67
FOXN3O00409 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.26■□□□□ 0.67
FOXN3O00409 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.26■□□□□ 0.67
FOXN3O00409 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.26■□□□□ 0.67
FOXN3O00409 RN7SL850P-201ENST00000579959 291 ntBASIC19.26■□□□□ 0.67
FOXN3O00409 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
FOXN3O00409 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXN3O00409 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXN3O00409 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
FOXN3O00409 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
FOXN3O00409 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.25■□□□□ 0.67
FOXN3O00409 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXN3O00409 KRT18P65-201ENST00000439811 1286 ntBASIC19.25■□□□□ 0.67
FOXN3O00409 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.25■□□□□ 0.67
FOXN3O00409 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.25■□□□□ 0.67
FOXN3O00409 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
FOXN3O00409 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXN3O00409 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
FOXN3O00409 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
FOXN3O00409 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXN3O00409 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXN3O00409 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
FOXN3O00409 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXN3O00409 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.24■□□□□ 0.67
FOXN3O00409 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXN3O00409 AC063952.2-201ENST00000498792 1227 ntBASIC19.24■□□□□ 0.67
FOXN3O00409 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXN3O00409 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.24■□□□□ 0.67
FOXN3O00409 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXN3O00409 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
FOXN3O00409 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXN3O00409 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 AL355312.1-201ENST00000407115 2176 ntBASIC19.23■□□□□ 0.67
FOXN3O00409 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXN3O00409 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXN3O00409 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
FOXN3O00409 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXN3O00409 IGHGP-201ENST00000390555 1178 ntBASIC19.23■□□□□ 0.67
FOXN3O00409 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.23■□□□□ 0.67
FOXN3O00409 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXN3O00409 AP003733.1-201ENST00000491725 852 ntBASIC19.23■□□□□ 0.67
FOXN3O00409 VENTXP5-201ENST00000523979 775 ntBASIC19.23■□□□□ 0.67
FOXN3O00409 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.23■□□□□ 0.67
FOXN3O00409 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXN3O00409 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXN3O00409 ZNF444P1-201ENST00000559497 298 ntBASIC19.23■□□□□ 0.67
FOXN3O00409 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXN3O00409 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
FOXN3O00409 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXN3O00409 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
FOXN3O00409 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
FOXN3O00409 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
FOXN3O00409 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXN3O00409 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
FOXN3O00409 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXN3O00409 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms