Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CBX4O00257 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.36■□□□□ 0.53
CBX4O00257 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.36■□□□□ 0.53
CBX4O00257 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
CBX4O00257 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CBX4O00257 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CBX4O00257 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 AC091607.1-201ENST00000490318 1060 ntBASIC18.36■□□□□ 0.53
CBX4O00257 AC104819.1-201ENST00000504587 486 ntBASIC18.36■□□□□ 0.53
CBX4O00257 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
CBX4O00257 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.36■□□□□ 0.53
CBX4O00257 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.36■□□□□ 0.53
CBX4O00257 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.36■□□□□ 0.53
CBX4O00257 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CBX4O00257 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.36■□□□□ 0.53
CBX4O00257 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.36■□□□□ 0.53
CBX4O00257 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.35■□□□□ 0.53
CBX4O00257 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.35■□□□□ 0.53
CBX4O00257 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 AP000347.1-202ENST00000435868 847 ntBASIC18.35■□□□□ 0.53
CBX4O00257 KRT17P6-201ENST00000453795 1220 ntBASIC18.35■□□□□ 0.53
CBX4O00257 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.35■□□□□ 0.53
CBX4O00257 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.35■□□□□ 0.53
CBX4O00257 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 AC012615.1-201ENST00000565797 1299 ntBASIC18.35■□□□□ 0.53
CBX4O00257 AP005901.3-202ENST00000581653 237 ntBASIC18.35■□□□□ 0.53
CBX4O00257 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.35■□□□□ 0.53
CBX4O00257 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CBX4O00257 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CBX4O00257 BICD1-207ENST00000551848 1962 ntBASIC18.35■□□□□ 0.53
CBX4O00257 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.35■□□□□ 0.53
CBX4O00257 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CBX4O00257 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.34■□□□□ 0.53
CBX4O00257 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CBX4O00257 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.34■□□□□ 0.53
CBX4O00257 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.34■□□□□ 0.53
CBX4O00257 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
CBX4O00257 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 AC112698.1-201ENST00000510299 916 ntBASIC18.34■□□□□ 0.53
CBX4O00257 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms