Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 AL138688.1-201ENST00000624851 1594 ntBASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 AC091390.4-202ENST00000476426 537 ntBASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 AC133041.1-202ENST00000642053 222 ntBASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
USH1CQ9Y6N9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
USH1CQ9Y6N9 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 AP000593.1-201ENST00000393668 712 ntBASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 UNC93B5-201ENST00000530315 699 ntBASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 AC008403.3-201ENST00000598924 454 ntBASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USH1CQ9Y6N9 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 AC069152.1-201ENST00000438030 544 ntBASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 KRT16P5-201ENST00000455284 522 ntBASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 AL355312.1-201ENST00000407115 2176 ntBASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
USH1CQ9Y6N9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms