Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHGA3Q9Y5H0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHGA3Q9Y5H0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHGA3Q9Y5H0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AL031598.1-201ENST00000561511 1773 ntBASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AC079781.3-201ENST00000449110 356 ntBASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 VENTXP7-201ENST00000475503 772 ntBASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 AL353801.3-201ENST00000609898 542 ntBASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHGA3Q9Y5H0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AP002469.2-201ENST00000531724 424 ntBASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AL662844.1-201ENST00000546340 181 ntBASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AC099336.1-202ENST00000602961 463 ntBASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AC138894.3-201ENST00000603787 634 ntBASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.48■□□□□ 0.39
PCDHGA3Q9Y5H0 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 LINC00167-201ENST00000530583 1419 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms