Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC113404.2-201ENST00000507884 177 ntBASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 AC108860.2-201ENST00000562760 2183 ntBASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIMCH1Q9UPQ0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 SIRPAP1-201ENST00000448467 1770 ntBASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMCH1Q9UPQ0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 AC145285.6-201ENST00000604632 637 ntBASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMCH1Q9UPQ0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AC034232.1-201ENST00000506026 1064 ntBASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AC093827.2-201ENST00000512654 315 ntBASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms