Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 MTCL1P1-201ENST00000446207 792 ntBASIC19.19■□□□□ 0.66
CISHQ9NSE2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 AC112698.1-201ENST00000510299 916 ntBASIC19.19■□□□□ 0.66
CISHQ9NSE2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 AL592071.1-201ENST00000611956 408 ntBASIC19.19■□□□□ 0.66
CISHQ9NSE2 IGHV3-41-201ENST00000613121 348 ntBASIC19.19■□□□□ 0.66
CISHQ9NSE2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CISHQ9NSE2 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.19■□□□□ 0.66
CISHQ9NSE2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 AL133373.2-201ENST00000623187 2828 ntBASIC19.18■□□□□ 0.66
CISHQ9NSE2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 CHCHD2P8-201ENST00000429873 447 ntBASIC19.18■□□□□ 0.66
CISHQ9NSE2 SLC25A6P5-201ENST00000435663 894 ntBASIC19.18■□□□□ 0.66
CISHQ9NSE2 TSSC2-201ENST00000450217 709 ntBASIC19.18■□□□□ 0.66
CISHQ9NSE2 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 AC124864.1-201ENST00000623408 392 ntBASIC19.18■□□□□ 0.66
CISHQ9NSE2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CISHQ9NSE2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.18■□□□□ 0.66
CISHQ9NSE2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 NOC2LP2-201ENST00000407594 1944 ntBASIC19.17■□□□□ 0.66
CISHQ9NSE2 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 KRT8P47-201ENST00000604727 1398 ntBASIC19.17■□□□□ 0.66
CISHQ9NSE2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CISHQ9NSE2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CISHQ9NSE2 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CISHQ9NSE2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.16■□□□□ 0.66
CISHQ9NSE2 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CISHQ9NSE2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CISHQ9NSE2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
CISHQ9NSE2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CISHQ9NSE2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms