Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.62■□□□□ 0.09
COL12A1Q99715 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
COL12A1Q99715 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 AC025580.3-201ENST00000617932 1424 ntBASIC15.62■□□□□ 0.09
COL12A1Q99715 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
COL12A1Q99715 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC15.62■□□□□ 0.09
COL12A1Q99715 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL12A1Q99715 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.62■□□□□ 0.09
COL12A1Q99715 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.62■□□□□ 0.09
COL12A1Q99715 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL12A1Q99715 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 AL627223.1-201ENST00000416693 442 ntBASIC15.61■□□□□ 0.09
COL12A1Q99715 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.61■□□□□ 0.09
COL12A1Q99715 PRYP5-201ENST00000451909 266 ntBASIC15.61■□□□□ 0.09
COL12A1Q99715 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.61■□□□□ 0.09
COL12A1Q99715 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.61■□□□□ 0.09
COL12A1Q99715 MIR6805-201ENST00000615055 62 ntBASIC15.61■□□□□ 0.09
COL12A1Q99715 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
COL12A1Q99715 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC15.61■□□□□ 0.09
COL12A1Q99715 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.61■□□□□ 0.09
COL12A1Q99715 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.61■□□□□ 0.09
COL12A1Q99715 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.61■□□□□ 0.09
COL12A1Q99715 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.61■□□□□ 0.09
COL12A1Q99715 AC010654.1-201ENST00000615722 808 ntBASIC15.61■□□□□ 0.09
COL12A1Q99715 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL12A1Q99715 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.6■□□□□ 0.09
COL12A1Q99715 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL12A1Q99715 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.6■□□□□ 0.09
COL12A1Q99715 BASP1P1-201ENST00000430708 665 ntBASIC15.6■□□□□ 0.09
COL12A1Q99715 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.6■□□□□ 0.09
COL12A1Q99715 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.6■□□□□ 0.09
COL12A1Q99715 SPTSSB-204ENST00000617024 1292 ntBASIC15.6■□□□□ 0.09
COL12A1Q99715 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.6■□□□□ 0.09
COL12A1Q99715 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
COL12A1Q99715 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
COL12A1Q99715 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL12A1Q99715 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.6■□□□□ 0.09
COL12A1Q99715 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
COL12A1Q99715 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL12A1Q99715 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.6■□□□□ 0.09
COL12A1Q99715 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC15.6■□□□□ 0.09
COL12A1Q99715 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
COL12A1Q99715 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL12A1Q99715 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 FP475955.4-201ENST00000623131 1990 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.59■□□□□ 0.09
COL12A1Q99715 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 MIR149-201ENST00000384879 89 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 AC007967.3-201ENST00000434308 558 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 RN7SL692P-201ENST00000464677 288 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.59■□□□□ 0.09
COL12A1Q99715 AC010507.1-201ENST00000633895 436 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.59■□□□□ 0.09
COL12A1Q99715 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.59■□□□□ 0.09
COL12A1Q99715 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.59■□□□□ 0.09
COL12A1Q99715 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms