Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 PRYP5-201ENST00000451909 266 ntBASIC17.68■□□□□ 0.42
VPS13AQ96RL7 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 RHOQP3-201ENST00000437982 621 ntBASIC17.68■□□□□ 0.42
VPS13AQ96RL7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 AC025678.2-201ENST00000562061 970 ntBASIC17.68■□□□□ 0.42
VPS13AQ96RL7 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
VPS13AQ96RL7 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 TERF1P3-201ENST00000505638 1227 ntBASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AL589182.2-201ENST00000619332 1049 ntBASIC17.67■□□□□ 0.42
VPS13AQ96RL7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AC010507.1-201ENST00000633895 436 ntBASIC17.67■□□□□ 0.42
VPS13AQ96RL7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 TSPY16P-201ENST00000449843 468 ntBASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 MIR4751-201ENST00000578027 74 ntBASIC17.67■□□□□ 0.42
VPS13AQ96RL7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS13AQ96RL7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 PMS2P4-201ENST00000412466 1052 ntBASIC17.66■□□□□ 0.42
VPS13AQ96RL7 MTCL1P1-201ENST00000446207 792 ntBASIC17.66■□□□□ 0.42
VPS13AQ96RL7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 SPDYE21P-201ENST00000413323 827 ntBASIC17.66■□□□□ 0.42
VPS13AQ96RL7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 CRB3P1-201ENST00000449338 276 ntBASIC17.66■□□□□ 0.42
VPS13AQ96RL7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 AC132938.6-201ENST00000623828 1655 ntBASIC17.66■□□□□ 0.42
VPS13AQ96RL7 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS13AQ96RL7 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS13AQ96RL7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms