Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 AL158047.1-201ENST00000445918 881 ntBASIC19.43■□□□□ 0.7
CCDC42Q96M95 CCR12P-201ENST00000446203 998 ntBASIC19.43■□□□□ 0.7
CCDC42Q96M95 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 BX088651.1-201ENST00000540551 451 ntBASIC19.43■□□□□ 0.7
CCDC42Q96M95 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC42Q96M95 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC42Q96M95 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AC092338.2-201ENST00000568827 1415 ntBASIC19.42■□□□□ 0.7
CCDC42Q96M95 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AP003071.4-201ENST00000562276 1284 ntBASIC19.42■□□□□ 0.7
CCDC42Q96M95 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC42Q96M95 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC42Q96M95 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 UNC93B2-201ENST00000285383 730 ntBASIC19.41■□□□□ 0.7
CCDC42Q96M95 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.41■□□□□ 0.7
CCDC42Q96M95 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC42Q96M95 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC42Q96M95 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms