Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 AC004461.1-201ENST00000412461 403 ntBASIC19.41■□□□□ 0.7
LRCH3Q96II8 VN2R19P-201ENST00000442399 1052 ntBASIC19.41■□□□□ 0.7
LRCH3Q96II8 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LRCH3Q96II8 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRCH3Q96II8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 AC098818.2-201ENST00000564925 2320 ntBASIC19.4■□□□□ 0.7
LRCH3Q96II8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 FAM58CP-201ENST00000435741 640 ntBASIC19.4■□□□□ 0.7
LRCH3Q96II8 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 LINC00628-201ENST00000628516 1289 ntBASIC19.4■□□□□ 0.7
LRCH3Q96II8 AL513210.1-201ENST00000629608 234 ntBASIC19.4■□□□□ 0.7
LRCH3Q96II8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRCH3Q96II8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
LRCH3Q96II8 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LRCH3Q96II8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LRCH3Q96II8 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
LRCH3Q96II8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.39■□□□□ 0.7
LRCH3Q96II8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 TFAMP1-201ENST00000412727 736 ntBASIC19.39■□□□□ 0.69
LRCH3Q96II8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 TSPY16P-201ENST00000449843 468 ntBASIC19.39■□□□□ 0.69
LRCH3Q96II8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 AL022326.1-202ENST00000641533 845 ntBASIC19.39■□□□□ 0.69
LRCH3Q96II8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRCH3Q96II8 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
LRCH3Q96II8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms