Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.2■□□□□ 0.98
BRF1Q92994 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
BRF1Q92994 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF1Q92994 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
BRF1Q92994 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.2■□□□□ 0.98
BRF1Q92994 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.2■□□□□ 0.98
BRF1Q92994 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.2■□□□□ 0.98
BRF1Q92994 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.2■□□□□ 0.98
BRF1Q92994 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.2■□□□□ 0.98
BRF1Q92994 AC083849.1-201ENST00000615227 514 ntBASIC21.2■□□□□ 0.98
BRF1Q92994 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
BRF1Q92994 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF1Q92994 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.2■□□□□ 0.98
BRF1Q92994 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF1Q92994 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF1Q92994 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF1Q92994 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.2■□□□□ 0.98
BRF1Q92994 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 AC006116.8-202ENST00000587620 1550 ntBASIC21.19■□□□□ 0.98
BRF1Q92994 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.19■□□□□ 0.98
BRF1Q92994 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.19■□□□□ 0.98
BRF1Q92994 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 ZNF444P1-201ENST00000559497 298 ntBASIC21.19■□□□□ 0.98
BRF1Q92994 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.19■□□□□ 0.98
BRF1Q92994 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.19■□□□□ 0.98
BRF1Q92994 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.19■□□□□ 0.98
BRF1Q92994 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
BRF1Q92994 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.18■□□□□ 0.98
BRF1Q92994 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
BRF1Q92994 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.18■□□□□ 0.98
BRF1Q92994 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.18■□□□□ 0.98
BRF1Q92994 AP003733.1-201ENST00000491725 852 ntBASIC21.18■□□□□ 0.98
BRF1Q92994 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.18■□□□□ 0.98
BRF1Q92994 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
BRF1Q92994 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.18■□□□□ 0.98
BRF1Q92994 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
BRF1Q92994 FZD10-202ENST00000539839 3282 ntBASIC21.18■□□□□ 0.98
BRF1Q92994 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
BRF1Q92994 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.18■□□□□ 0.98
BRF1Q92994 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.18■□□□□ 0.98
BRF1Q92994 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
BRF1Q92994 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
BRF1Q92994 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
BRF1Q92994 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 IGHGP-201ENST00000390555 1178 ntBASIC21.17■□□□□ 0.98
BRF1Q92994 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.17■□□□□ 0.98
BRF1Q92994 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
BRF1Q92994 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
BRF1Q92994 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.17■□□□□ 0.98
BRF1Q92994 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.17■□□□□ 0.98
BRF1Q92994 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.17■□□□□ 0.98
BRF1Q92994 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.17■□□□□ 0.98
BRF1Q92994 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.17■□□□□ 0.98
BRF1Q92994 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
BRF1Q92994 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.17■□□□□ 0.98
BRF1Q92994 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms