Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 AC005336.2-201ENST00000593183 939 ntBASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 AC074051.2-201ENST00000565115 352 ntBASIC21.27■■□□□ 1
NKX2-3Q8TAU0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
NKX2-3Q8TAU0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.27■□□□□ 0.99
NKX2-3Q8TAU0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NKX2-3Q8TAU0 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.27■□□□□ 0.99
NKX2-3Q8TAU0 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NKX2-3Q8TAU0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 AC018470.1-201ENST00000624790 3129 ntBASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 SAPCD2P3-201ENST00000455031 850 ntBASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NKX2-3Q8TAU0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 AL133373.2-201ENST00000623187 2828 ntBASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 Z69720.1-201ENST00000601483 472 ntBASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 IGHV3-41-201ENST00000613121 348 ntBASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NKX2-3Q8TAU0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.24■□□□□ 0.99
NKX2-3Q8TAU0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms