Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 BX276092.5-203ENST00000456199 560 ntBASIC17.59■□□□□ 0.41
VRK3Q8IV63 RN7SL606P-201ENST00000472779 293 ntBASIC17.59■□□□□ 0.41
VRK3Q8IV63 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
VRK3Q8IV63 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VRK3Q8IV63 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.58■□□□□ 0.41
VRK3Q8IV63 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.58■□□□□ 0.41
VRK3Q8IV63 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
VRK3Q8IV63 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VRK3Q8IV63 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
VRK3Q8IV63 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VRK3Q8IV63 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 AL845331.1-201ENST00000424978 1190 ntBASIC17.58■□□□□ 0.4
VRK3Q8IV63 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 MTCL1P1-201ENST00000446207 792 ntBASIC17.58■□□□□ 0.4
VRK3Q8IV63 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 AC112698.1-201ENST00000510299 916 ntBASIC17.58■□□□□ 0.4
VRK3Q8IV63 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 AL121672.3-201ENST00000608644 468 ntBASIC17.58■□□□□ 0.4
VRK3Q8IV63 AL592071.1-201ENST00000611956 408 ntBASIC17.58■□□□□ 0.4
VRK3Q8IV63 AC124864.1-201ENST00000623408 392 ntBASIC17.58■□□□□ 0.4
VRK3Q8IV63 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
VRK3Q8IV63 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VRK3Q8IV63 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 AP002383.4-201ENST00000442518 975 ntBASIC17.57■□□□□ 0.4
VRK3Q8IV63 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 AC091076.1-201ENST00000610741 619 ntBASIC17.57■□□□□ 0.4
VRK3Q8IV63 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VRK3Q8IV63 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VRK3Q8IV63 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.56■□□□□ 0.4
VRK3Q8IV63 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK3Q8IV63 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.56■□□□□ 0.4
VRK3Q8IV63 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK3Q8IV63 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK3Q8IV63 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VRK3Q8IV63 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.56■□□□□ 0.4
VRK3Q8IV63 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms