Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHROOM1Q2M3G4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 AC096633.1-201ENST00000422446 749 ntBASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 SIRPAP1-201ENST00000448467 1770 ntBASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 AC034105.1-201ENST00000563488 319 ntBASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 AC093677.2-201ENST00000600169 1863 ntBASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHROOM1Q2M3G4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 PMPCAP1-201ENST00000508114 1576 ntBASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 AC097374.2-201ENST00000618617 1306 ntBASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 AL139288.1-201ENST00000623748 933 ntBASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHROOM1Q2M3G4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.89■□□□□ 0.94
SHROOM1Q2M3G4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHROOM1Q2M3G4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 RNA5SP415-201ENST00000517246 115 ntBASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 PGAM5P1-201ENST00000518923 814 ntBASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHROOM1Q2M3G4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 AC145285.3-201ENST00000564603 959 ntBASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 AC008735.5-201ENST00000623544 497 ntBASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHROOM1Q2M3G4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms