Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 AC026185.1-201ENST00000445748 174 ntBASIC12.64□□□□□ -0.39
CKS1BP61024 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC12.64□□□□□ -0.39
CKS1BP61024 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC12.64□□□□□ -0.39
CKS1BP61024 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC12.64□□□□□ -0.39
CKS1BP61024 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC12.64□□□□□ -0.39
CKS1BP61024 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC12.64□□□□□ -0.39
CKS1BP61024 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
CKS1BP61024 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC12.63□□□□□ -0.39
CKS1BP61024 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
CKS1BP61024 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC12.63□□□□□ -0.39
CKS1BP61024 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 AC022517.1-201ENST00000592429 346 ntBASIC12.63□□□□□ -0.39
CKS1BP61024 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
CKS1BP61024 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC12.63□□□□□ -0.39
CKS1BP61024 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CKS1BP61024 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CKS1BP61024 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS1BP61024 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS1BP61024 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS1BP61024 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS1BP61024 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS1BP61024 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS1BP61024 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS1BP61024 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms