Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
FOXA1P55317 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
FOXA1P55317 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
FOXA1P55317 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.44■□□□□ 0.38
FOXA1P55317 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.44■□□□□ 0.38
FOXA1P55317 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.44■□□□□ 0.38
FOXA1P55317 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
FOXA1P55317 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.44■□□□□ 0.38
FOXA1P55317 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.44■□□□□ 0.38
FOXA1P55317 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
FOXA1P55317 LINC00602-201ENST00000629776 2065 ntBASIC17.43■□□□□ 0.38
FOXA1P55317 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 HMGA1P5-201ENST00000412453 271 ntBASIC17.43■□□□□ 0.38
FOXA1P55317 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.43■□□□□ 0.38
FOXA1P55317 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 HTR7P1-202ENST00000624664 4411 ntBASIC17.43■□□□□ 0.38
FOXA1P55317 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.43■□□□□ 0.38
FOXA1P55317 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA1P55317 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
FOXA1P55317 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA1P55317 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.42■□□□□ 0.38
FOXA1P55317 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.42■□□□□ 0.38
FOXA1P55317 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.42■□□□□ 0.38
FOXA1P55317 NEK4P2-201ENST00000580004 1012 ntBASIC17.42■□□□□ 0.38
FOXA1P55317 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA1P55317 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
FOXA1P55317 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
FOXA1P55317 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
FOXA1P55317 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 AC099398.1-201ENST00000567919 2776 ntBASIC17.42■□□□□ 0.38
FOXA1P55317 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA1P55317 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXA1P55317 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA1P55317 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA1P55317 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.41■□□□□ 0.38
FOXA1P55317 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
FOXA1P55317 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.41■□□□□ 0.38
FOXA1P55317 PVRIG2P-201ENST00000435460 978 ntBASIC17.41■□□□□ 0.38
FOXA1P55317 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXA1P55317 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.41■□□□□ 0.38
FOXA1P55317 AC092865.7-201ENST00000641832 219 ntBASIC17.41■□□□□ 0.38
FOXA1P55317 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
FOXA1P55317 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
FOXA1P55317 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.41■□□□□ 0.38
FOXA1P55317 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA1P55317 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms