Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 AL162727.3-201ENST00000635661 2787 ntBASIC18.93■□□□□ 0.62
LIG3P49916 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.93■□□□□ 0.62
LIG3P49916 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
LIG3P49916 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.93■□□□□ 0.62
LIG3P49916 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 AC011676.5-201ENST00000624864 2660 ntBASIC18.93■□□□□ 0.62
LIG3P49916 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.93■□□□□ 0.62
LIG3P49916 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIG3P49916 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 NKILA-202ENST00000614771 2598 ntBASIC18.92■□□□□ 0.62
LIG3P49916 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
LIG3P49916 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 AC108860.2-201ENST00000562760 2183 ntBASIC18.92■□□□□ 0.62
LIG3P49916 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.92■□□□□ 0.62
LIG3P49916 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.92■□□□□ 0.62
LIG3P49916 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 AC010331.1-201ENST00000611423 582 ntBASIC18.92■□□□□ 0.62
LIG3P49916 AC008622.2-201ENST00000617006 1229 ntBASIC18.92■□□□□ 0.62
LIG3P49916 AL138966.2-201ENST00000621997 464 ntBASIC18.92■□□□□ 0.62
LIG3P49916 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.92■□□□□ 0.62
LIG3P49916 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.92■□□□□ 0.62
LIG3P49916 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIG3P49916 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIG3P49916 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LIG3P49916 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.91■□□□□ 0.62
LIG3P49916 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LIG3P49916 IRX1P1-201ENST00000438849 1838 ntBASIC18.91■□□□□ 0.62
LIG3P49916 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LIG3P49916 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
LIG3P49916 AC104076.2-201ENST00000448912 469 ntBASIC18.91■□□□□ 0.62
LIG3P49916 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 AL512604.3-201ENST00000569583 964 ntBASIC18.91■□□□□ 0.62
LIG3P49916 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.91■□□□□ 0.62
LIG3P49916 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIG3P49916 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIG3P49916 FEM1AP3-201ENST00000403722 1741 ntBASIC18.91■□□□□ 0.62
LIG3P49916 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LIG3P49916 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LIG3P49916 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.91■□□□□ 0.62
LIG3P49916 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIG3P49916 KRT8P45-201ENST00000414328 1447 ntBASIC18.91■□□□□ 0.62
LIG3P49916 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms