Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KRT8P50-201ENST00000562022 1438 ntBASIC15.68■□□□□ 0.1
COL8A1P27658 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.67■□□□□ 0.1
COL8A1P27658 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 TEX21P-204ENST00000641479 1693 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 AC004817.3-201ENST00000602957 2129 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.67■□□□□ 0.1
COL8A1P27658 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.67■□□□□ 0.1
COL8A1P27658 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 GK-202ENST00000378941 458 ntTSL 3 BASIC15.67■□□□□ 0.1
COL8A1P27658 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.67■□□□□ 0.1
COL8A1P27658 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.67■□□□□ 0.1
COL8A1P27658 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.67■□□□□ 0.1
COL8A1P27658 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.67■□□□□ 0.1
COL8A1P27658 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.67■□□□□ 0.1
COL8A1P27658 AL031432.2-201ENST00000566714 459 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 AL928711.1-201ENST00000570165 459 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.67■□□□□ 0.1
COL8A1P27658 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 AF228730.6-201ENST00000641497 218 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 AC084121.3-201ENST00000641716 218 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 AC105233.6-201ENST00000642093 218 ntBASIC15.67■□□□□ 0.1
COL8A1P27658 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL8A1P27658 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.67■□□□□ 0.1
COL8A1P27658 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL8A1P27658 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL8A1P27658 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL8A1P27658 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL8A1P27658 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL8A1P27658 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.66■□□□□ 0.1
COL8A1P27658 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.66■□□□□ 0.1
COL8A1P27658 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.66■□□□□ 0.1
COL8A1P27658 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.66■□□□□ 0.1
COL8A1P27658 AC069262.1-201ENST00000539058 672 ntBASIC15.66■□□□□ 0.1
COL8A1P27658 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.66■□□□□ 0.1
COL8A1P27658 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.66■□□□□ 0.1
COL8A1P27658 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
COL8A1P27658 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL8A1P27658 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL8A1P27658 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.66■□□□□ 0.1
COL8A1P27658 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL8A1P27658 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.66■□□□□ 0.1
COL8A1P27658 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.66■□□□□ 0.1
COL8A1P27658 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 GPR89P-201ENST00000407924 1495 ntBASIC15.65■□□□□ 0.1
COL8A1P27658 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.65■□□□□ 0.1
COL8A1P27658 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.65■□□□□ 0.1
COL8A1P27658 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.65■□□□□ 0.1
COL8A1P27658 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.65■□□□□ 0.1
COL8A1P27658 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 CRYGEP-201ENST00000412192 528 ntBASIC15.65■□□□□ 0.1
COL8A1P27658 AC015922.1-201ENST00000421102 1152 ntBASIC15.65■□□□□ 0.1
COL8A1P27658 AC007274.1-201ENST00000439805 662 ntBASIC15.65■□□□□ 0.1
COL8A1P27658 AC005498.2-205ENST00000593218 784 ntBASIC15.65■□□□□ 0.1
COL8A1P27658 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.65■□□□□ 0.1
COL8A1P27658 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.65■□□□□ 0.1
COL8A1P27658 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms