Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC3P19447 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 PMS2P1-201ENST00000431037 1228 ntBASIC20.81■□□□□ 0.92
ERCC3P19447 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC3P19447 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.81■□□□□ 0.92
ERCC3P19447 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.81■□□□□ 0.92
ERCC3P19447 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC3P19447 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.81■□□□□ 0.92
ERCC3P19447 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC3P19447 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC3P19447 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC3P19447 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.81■□□□□ 0.92
ERCC3P19447 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ERCC3P19447 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC3P19447 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.8■□□□□ 0.92
ERCC3P19447 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
ERCC3P19447 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
ERCC3P19447 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.8■□□□□ 0.92
ERCC3P19447 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ERCC3P19447 AC018712.1-201ENST00000455767 687 ntBASIC20.8■□□□□ 0.92
ERCC3P19447 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC3P19447 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.8■□□□□ 0.92
ERCC3P19447 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.8■□□□□ 0.92
ERCC3P19447 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC3P19447 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.8■□□□□ 0.92
ERCC3P19447 AL355877.3-201ENST00000622820 899 ntBASIC20.8■□□□□ 0.92
ERCC3P19447 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
ERCC3P19447 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC3P19447 AC007613.1-201ENST00000572811 2597 ntBASIC20.8■□□□□ 0.92
ERCC3P19447 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 AL499627.1-201ENST00000569373 2188 ntBASIC20.79■□□□□ 0.92
ERCC3P19447 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
ERCC3P19447 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.79■□□□□ 0.92
ERCC3P19447 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.79■□□□□ 0.92
ERCC3P19447 MTCL1P1-201ENST00000446207 792 ntBASIC20.79■□□□□ 0.92
ERCC3P19447 FGFR3P6-201ENST00000457012 610 ntBASIC20.79■□□□□ 0.92
ERCC3P19447 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.79■□□□□ 0.92
ERCC3P19447 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.79■□□□□ 0.92
ERCC3P19447 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.79■□□□□ 0.92
ERCC3P19447 AC243591.1-201ENST00000452967 1364 ntBASIC20.79■□□□□ 0.92
ERCC3P19447 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.79■□□□□ 0.92
ERCC3P19447 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
ERCC3P19447 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
ERCC3P19447 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
ERCC3P19447 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC3P19447 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.78■□□□□ 0.92
ERCC3P19447 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.78■□□□□ 0.92
ERCC3P19447 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.78■□□□□ 0.92
ERCC3P19447 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.78■□□□□ 0.92
ERCC3P19447 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 RNPS1P1-201ENST00000507437 918 ntBASIC20.78■□□□□ 0.92
ERCC3P19447 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.78■□□□□ 0.92
ERCC3P19447 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.78■□□□□ 0.92
ERCC3P19447 AL049840.3-201ENST00000602669 611 ntBASIC20.78■□□□□ 0.92
ERCC3P19447 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.78■□□□□ 0.92
ERCC3P19447 AC009154.2-201ENST00000621177 724 ntBASIC20.78■□□□□ 0.92
ERCC3P19447 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms