Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC1P18827 AC087499.1-201ENST00000418141 1075 ntBASIC17.16■□□□□ 0.34
SDC1P18827 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC1P18827 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC1P18827 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SDC1P18827 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SDC1P18827 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC1P18827 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC1P18827 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
SDC1P18827 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC1P18827 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC1P18827 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SDC1P18827 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC1P18827 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDC1P18827 AC022898.2-201ENST00000616822 1312 ntBASIC17.16■□□□□ 0.34
SDC1P18827 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC1P18827 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC1P18827 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC1P18827 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.15■□□□□ 0.34
SDC1P18827 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.15■□□□□ 0.34
SDC1P18827 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.15■□□□□ 0.34
SDC1P18827 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.15■□□□□ 0.34
SDC1P18827 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.15■□□□□ 0.34
SDC1P18827 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.15■□□□□ 0.34
SDC1P18827 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
SDC1P18827 AL023973.1-201ENST00000624619 620 ntBASIC17.15■□□□□ 0.34
SDC1P18827 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.15■□□□□ 0.34
SDC1P18827 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.15■□□□□ 0.34
SDC1P18827 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.15■□□□□ 0.34
SDC1P18827 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDC1P18827 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.14■□□□□ 0.34
SDC1P18827 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
SDC1P18827 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SDC1P18827 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.14■□□□□ 0.34
SDC1P18827 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
SDC1P18827 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 AC141586.5-201ENST00000624546 2050 ntBASIC17.14■□□□□ 0.33
SDC1P18827 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.14■□□□□ 0.33
SDC1P18827 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.14■□□□□ 0.33
SDC1P18827 SLC25A3P1-201ENST00000443844 931 ntBASIC17.14■□□□□ 0.33
SDC1P18827 AC113404.2-201ENST00000507884 177 ntBASIC17.14■□□□□ 0.33
SDC1P18827 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.14■□□□□ 0.33
SDC1P18827 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.14■□□□□ 0.33
SDC1P18827 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SDC1P18827 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SDC1P18827 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.14■□□□□ 0.33
SDC1P18827 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.14■□□□□ 0.33
SDC1P18827 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDC1P18827 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.14■□□□□ 0.33
SDC1P18827 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SDC1P18827 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
SDC1P18827 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms