Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.62■□□□□ 0.57
COL6A3P12111 AL158211.3-201ENST00000607385 239 ntBASIC18.62■□□□□ 0.57
COL6A3P12111 AC019129.2-201ENST00000609837 1235 ntBASIC18.62■□□□□ 0.57
COL6A3P12111 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 AC009118.2-201ENST00000613275 655 ntBASIC18.61■□□□□ 0.57
COL6A3P12111 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A3P12111 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A3P12111 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
COL6A3P12111 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A3P12111 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A3P12111 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL6A3P12111 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL6A3P12111 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.61■□□□□ 0.57
COL6A3P12111 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A3P12111 AC099568.2-201ENST00000609194 695 ntBASIC18.61■□□□□ 0.57
COL6A3P12111 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A3P12111 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A3P12111 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A3P12111 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.6■□□□□ 0.57
COL6A3P12111 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A3P12111 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A3P12111 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL6A3P12111 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.6■□□□□ 0.57
COL6A3P12111 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 KRT8P44-201ENST00000441609 1350 ntBASIC18.6■□□□□ 0.57
COL6A3P12111 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A3P12111 AC010460.3-201ENST00000511359 1579 ntBASIC18.59■□□□□ 0.57
COL6A3P12111 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A3P12111 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL6A3P12111 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A3P12111 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A3P12111 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.59■□□□□ 0.57
COL6A3P12111 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A3P12111 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL6A3P12111 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
COL6A3P12111 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.59■□□□□ 0.57
COL6A3P12111 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A3P12111 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.59■□□□□ 0.57
COL6A3P12111 AD001527.2-201ENST00000622994 785 ntBASIC18.59■□□□□ 0.57
COL6A3P12111 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A3P12111 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A3P12111 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL6A3P12111 AC112492.5-201ENST00000421897 457 ntBASIC18.58■□□□□ 0.57
COL6A3P12111 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.58■□□□□ 0.57
COL6A3P12111 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.58■□□□□ 0.57
COL6A3P12111 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A3P12111 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A3P12111 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
COL6A3P12111 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A3P12111 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A3P12111 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL6A3P12111 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A3P12111 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.58■□□□□ 0.57
COL6A3P12111 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.58■□□□□ 0.57
COL6A3P12111 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.58■□□□□ 0.56
COL6A3P12111 AL024508.2-201ENST00000607749 1894 ntBASIC18.58■□□□□ 0.56
COL6A3P12111 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.58■□□□□ 0.56
COL6A3P12111 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
COL6A3P12111 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.58■□□□□ 0.56
COL6A3P12111 AC092506.1-202ENST00000401022 528 ntBASIC18.58■□□□□ 0.56
COL6A3P12111 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms