Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.44■□□□□ 0.38
CLDN9O95484 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.43■□□□□ 0.38
CLDN9O95484 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CLDN9O95484 LINC00602-201ENST00000629776 2065 ntBASIC17.43■□□□□ 0.38
CLDN9O95484 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CLDN9O95484 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.43■□□□□ 0.38
CLDN9O95484 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.43■□□□□ 0.38
CLDN9O95484 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.43■□□□□ 0.38
CLDN9O95484 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 AC024563.2-201ENST00000603282 481 ntBASIC17.43■□□□□ 0.38
CLDN9O95484 AC012306.2-201ENST00000609350 630 ntBASIC17.43■□□□□ 0.38
CLDN9O95484 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.43■□□□□ 0.38
CLDN9O95484 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
CLDN9O95484 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 AC005363.2-201ENST00000618631 242 ntBASIC17.43■□□□□ 0.38
CLDN9O95484 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.43■□□□□ 0.38
CLDN9O95484 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.43■□□□□ 0.38
CLDN9O95484 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.43■□□□□ 0.38
CLDN9O95484 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLDN9O95484 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CLDN9O95484 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.42■□□□□ 0.38
CLDN9O95484 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
CLDN9O95484 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
CLDN9O95484 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CLDN9O95484 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
CLDN9O95484 AC113347.1-201ENST00000413321 391 ntBASIC17.42■□□□□ 0.38
CLDN9O95484 AL137013.1-201ENST00000432946 1228 ntBASIC17.42■□□□□ 0.38
CLDN9O95484 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.42■□□□□ 0.38
CLDN9O95484 AC097493.4-201ENST00000641197 219 ntBASIC17.42■□□□□ 0.38
CLDN9O95484 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.42■□□□□ 0.38
CLDN9O95484 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.42■□□□□ 0.38
CLDN9O95484 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.42■□□□□ 0.38
CLDN9O95484 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CLDN9O95484 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.42■□□□□ 0.38
CLDN9O95484 KRT89P-201ENST00000620027 1478 ntBASIC17.42■□□□□ 0.38
CLDN9O95484 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.42■□□□□ 0.38
CLDN9O95484 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLDN9O95484 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.41■□□□□ 0.38
CLDN9O95484 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.41■□□□□ 0.38
CLDN9O95484 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.41■□□□□ 0.38
CLDN9O95484 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
CLDN9O95484 BX664615.1-201ENST00000443558 458 ntBASIC17.41■□□□□ 0.38
CLDN9O95484 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.41■□□□□ 0.38
CLDN9O95484 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CLDN9O95484 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.41■□□□□ 0.38
CLDN9O95484 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CLDN9O95484 AL441883.1-201ENST00000566170 1045 ntBASIC17.41■□□□□ 0.38
CLDN9O95484 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CLDN9O95484 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CLDN9O95484 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.41■□□□□ 0.38
CLDN9O95484 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLDN9O95484 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms