Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
SEMA3DO95025 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.26■□□□□ 0.35
SEMA3DO95025 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SEMA3DO95025 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 FAM8A6P-201ENST00000407496 1135 ntBASIC17.26■□□□□ 0.35
SEMA3DO95025 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 TSPY5P-201ENST00000426936 936 ntBASIC17.26■□□□□ 0.35
SEMA3DO95025 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.26■□□□□ 0.35
SEMA3DO95025 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.26■□□□□ 0.35
SEMA3DO95025 AC006011.2-201ENST00000621313 1158 ntBASIC17.26■□□□□ 0.35
SEMA3DO95025 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.26■□□□□ 0.35
SEMA3DO95025 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SEMA3DO95025 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SEMA3DO95025 AC068880.1-201ENST00000507289 2297 ntBASIC17.26■□□□□ 0.35
SEMA3DO95025 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SEMA3DO95025 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SEMA3DO95025 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.25■□□□□ 0.35
SEMA3DO95025 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.25■□□□□ 0.35
SEMA3DO95025 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SEMA3DO95025 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.25■□□□□ 0.35
SEMA3DO95025 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.25■□□□□ 0.35
SEMA3DO95025 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SEMA3DO95025 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.25■□□□□ 0.35
SEMA3DO95025 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SEMA3DO95025 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.25■□□□□ 0.35
SEMA3DO95025 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.25■□□□□ 0.35
SEMA3DO95025 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SEMA3DO95025 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 AC022898.2-201ENST00000616822 1312 ntBASIC17.24■□□□□ 0.35
SEMA3DO95025 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.24■□□□□ 0.35
SEMA3DO95025 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SEMA3DO95025 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.24■□□□□ 0.35
SEMA3DO95025 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SEMA3DO95025 AK4P3-201ENST00000418260 669 ntBASIC17.24■□□□□ 0.35
SEMA3DO95025 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SEMA3DO95025 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.24■□□□□ 0.35
SEMA3DO95025 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.24■□□□□ 0.35
SEMA3DO95025 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SEMA3DO95025 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.24■□□□□ 0.35
SEMA3DO95025 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
SEMA3DO95025 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
SEMA3DO95025 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SEMA3DO95025 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms