Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SLC25A1P2-201ENST00000430693 912 ntBASIC17.68■□□□□ 0.42
VPS4BO75351 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.68■□□□□ 0.42
VPS4BO75351 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4BO75351 AC010653.2-201ENST00000623505 997 ntBASIC17.68■□□□□ 0.42
VPS4BO75351 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4BO75351 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
VPS4BO75351 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 PKD1P1-201ENST00000458669 6805 ntBASIC17.68■□□□□ 0.42
VPS4BO75351 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4BO75351 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS4BO75351 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 SDHAP2-201ENST00000455183 2001 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 KRT8P7-201ENST00000533003 1432 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
VPS4BO75351 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 MFAP1P1-201ENST00000442257 1255 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.67■□□□□ 0.42
VPS4BO75351 AC140113.3-201ENST00000605663 199 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 AC141257.4-201ENST00000634557 245 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 AC136944.6-201ENST00000634818 245 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS4BO75351 KRT18P55-202ENST00000578578 1546 ntBASIC17.67■□□□□ 0.42
VPS4BO75351 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS4BO75351 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS4BO75351 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VPS4BO75351 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS4BO75351 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS4BO75351 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS4BO75351 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.66■□□□□ 0.42
VPS4BO75351 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS4BO75351 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS4BO75351 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS4BO75351 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 AC036111.1-201ENST00000533973 1582 ntBASIC17.66■□□□□ 0.42
VPS4BO75351 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS4BO75351 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VPS4BO75351 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS4BO75351 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS4BO75351 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.65■□□□□ 0.42
VPS4BO75351 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 HOXB1-202ENST00000577092 1414 ntBASIC17.65■□□□□ 0.42
VPS4BO75351 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS4BO75351 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS4BO75351 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms