Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SDC3O75056 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.57■□□□□ 0.4
SDC3O75056 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.57■□□□□ 0.4
SDC3O75056 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.57■□□□□ 0.4
SDC3O75056 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.57■□□□□ 0.4
SDC3O75056 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.57■□□□□ 0.4
SDC3O75056 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.57■□□□□ 0.4
SDC3O75056 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.57■□□□□ 0.4
SDC3O75056 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SDC3O75056 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 ZNF259P1-201ENST00000407656 1365 ntBASIC17.56■□□□□ 0.4
SDC3O75056 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.56■□□□□ 0.4
SDC3O75056 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SDC3O75056 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.56■□□□□ 0.4
SDC3O75056 RPS2P28-201ENST00000314255 741 ntBASIC17.56■□□□□ 0.4
SDC3O75056 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.56■□□□□ 0.4
SDC3O75056 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.56■□□□□ 0.4
SDC3O75056 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.56■□□□□ 0.4
SDC3O75056 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.56■□□□□ 0.4
SDC3O75056 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.56■□□□□ 0.4
SDC3O75056 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.56■□□□□ 0.4
SDC3O75056 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.56■□□□□ 0.4
SDC3O75056 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.56■□□□□ 0.4
SDC3O75056 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SDC3O75056 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.56■□□□□ 0.4
SDC3O75056 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
SDC3O75056 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SDC3O75056 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 AC092910.1-201ENST00000482027 1129 ntBASIC17.55■□□□□ 0.4
SDC3O75056 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.55■□□□□ 0.4
SDC3O75056 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.55■□□□□ 0.4
SDC3O75056 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SDC3O75056 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SDC3O75056 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SDC3O75056 AC104109.2-201ENST00000602919 1418 ntBASIC17.55■□□□□ 0.4
SDC3O75056 AL356309.3-201ENST00000624132 1934 ntBASIC17.55■□□□□ 0.4
SDC3O75056 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 AC126763.1-201ENST00000552015 2118 ntBASIC17.54■□□□□ 0.4
SDC3O75056 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SDC3O75056 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 GMCL1P1-201ENST00000463439 1581 ntBASIC17.54■□□□□ 0.4
SDC3O75056 PMS2P7-201ENST00000506558 1336 ntBASIC17.54■□□□□ 0.4
SDC3O75056 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC3O75056 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.54■□□□□ 0.4
SDC3O75056 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC3O75056 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.54■□□□□ 0.4
SDC3O75056 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.54■□□□□ 0.4
SDC3O75056 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC3O75056 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.54■□□□□ 0.4
SDC3O75056 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.54■□□□□ 0.4
SDC3O75056 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.54■□□□□ 0.4
SDC3O75056 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms