Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM13O60858 LINC00602-201ENST00000629776 2065 ntBASIC17.73■□□□□ 0.43
TRIM13O60858 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM13O60858 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM13O60858 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TRIM13O60858 AC012618.2-201ENST00000428058 849 ntBASIC17.73■□□□□ 0.43
TRIM13O60858 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 AC233702.5-201ENST00000584107 538 ntBASIC17.73■□□□□ 0.43
TRIM13O60858 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM13O60858 AL049637.2-201ENST00000641778 930 ntBASIC17.73■□□□□ 0.43
TRIM13O60858 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TRIM13O60858 AC132938.6-201ENST00000623828 1655 ntBASIC17.73■□□□□ 0.43
TRIM13O60858 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 AC100803.2-201ENST00000562459 1963 ntBASIC17.73■□□□□ 0.43
TRIM13O60858 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM13O60858 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM13O60858 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TRIM13O60858 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.72■□□□□ 0.43
TRIM13O60858 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 KRT18P29-201ENST00000397031 1267 ntBASIC17.72■□□□□ 0.43
TRIM13O60858 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM13O60858 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TRIM13O60858 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM13O60858 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM13O60858 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
TRIM13O60858 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TRIM13O60858 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRIM13O60858 UBE2SP1-201ENST00000450587 669 ntBASIC17.71■□□□□ 0.43
TRIM13O60858 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms