Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.54■□□□□ 0.4
HDAC3O15379 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 AC104390.1-201ENST00000555663 520 ntBASIC17.54■□□□□ 0.4
HDAC3O15379 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 WWOX-216ENST00000569818 525 ntBASIC17.54■□□□□ 0.4
HDAC3O15379 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HDAC3O15379 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC3O15379 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC3O15379 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.53■□□□□ 0.4
HDAC3O15379 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HDAC3O15379 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
HDAC3O15379 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
HDAC3O15379 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HDAC3O15379 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
HDAC3O15379 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 CRYGFP-201ENST00000418459 633 ntBASIC17.53■□□□□ 0.4
HDAC3O15379 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.53■□□□□ 0.4
HDAC3O15379 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC3O15379 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.53■□□□□ 0.4
HDAC3O15379 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.53■□□□□ 0.4
HDAC3O15379 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.53■□□□□ 0.4
HDAC3O15379 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC3O15379 CR769767.2-201ENST00000622735 460 ntBASIC17.53■□□□□ 0.4
HDAC3O15379 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HDAC3O15379 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.53■□□□□ 0.4
HDAC3O15379 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
HDAC3O15379 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HDAC3O15379 PKD1P1-201ENST00000458669 6805 ntBASIC17.52■□□□□ 0.4
HDAC3O15379 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
HDAC3O15379 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HDAC3O15379 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC3O15379 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC3O15379 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HDAC3O15379 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
HDAC3O15379 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.52■□□□□ 0.4
HDAC3O15379 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.52■□□□□ 0.4
HDAC3O15379 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.52■□□□□ 0.4
HDAC3O15379 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.52■□□□□ 0.4
HDAC3O15379 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC3O15379 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.52■□□□□ 0.4
HDAC3O15379 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HDAC3O15379 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.52■□□□□ 0.4
HDAC3O15379 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HDAC3O15379 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.52■□□□□ 0.39
HDAC3O15379 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC3O15379 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC3O15379 LINC00304-203ENST00000565008 1864 ntBASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms