Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 AL359075.1-203ENST00000462729 1002 ntBASIC19.29■□□□□ 0.68
FOXN3O00409 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.29■□□□□ 0.68
FOXN3O00409 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.29■□□□□ 0.68
FOXN3O00409 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.29■□□□□ 0.68
FOXN3O00409 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.29■□□□□ 0.68
FOXN3O00409 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
FOXN3O00409 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
FOXN3O00409 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
FOXN3O00409 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
FOXN3O00409 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXN3O00409 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXN3O00409 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 AC022898.2-201ENST00000616822 1312 ntBASIC19.28■□□□□ 0.68
FOXN3O00409 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXN3O00409 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 HBZP1-201ENST00000354915 429 ntBASIC19.28■□□□□ 0.68
FOXN3O00409 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 RCN1P1-201ENST00000400413 996 ntBASIC19.28■□□□□ 0.68
FOXN3O00409 KRT18P48-201ENST00000434763 852 ntBASIC19.28■□□□□ 0.68
FOXN3O00409 HOMER2P1-201ENST00000455653 964 ntBASIC19.28■□□□□ 0.68
FOXN3O00409 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.28■□□□□ 0.68
FOXN3O00409 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.28■□□□□ 0.68
FOXN3O00409 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 AC004263.2-201ENST00000617183 678 ntBASIC19.28■□□□□ 0.68
FOXN3O00409 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
FOXN3O00409 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.28■□□□□ 0.68
FOXN3O00409 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
FOXN3O00409 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
FOXN3O00409 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXN3O00409 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXN3O00409 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
FOXN3O00409 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
FOXN3O00409 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.27■□□□□ 0.68
FOXN3O00409 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 MIR662-201ENST00000384847 95 ntBASIC19.27■□□□□ 0.68
FOXN3O00409 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXN3O00409 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.27■□□□□ 0.68
FOXN3O00409 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 FAM8A6P-201ENST00000407496 1135 ntBASIC19.27■□□□□ 0.68
FOXN3O00409 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
FOXN3O00409 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.27■□□□□ 0.68
FOXN3O00409 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.27■□□□□ 0.68
FOXN3O00409 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
FOXN3O00409 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
FOXN3O00409 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.27■□□□□ 0.68
FOXN3O00409 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
FOXN3O00409 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
FOXN3O00409 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
FOXN3O00409 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
FOXN3O00409 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
FOXN3O00409 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
FOXN3O00409 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
FOXN3O00409 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
FOXN3O00409 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.26■□□□□ 0.67
FOXN3O00409 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.26■□□□□ 0.67
FOXN3O00409 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.26■□□□□ 0.67
FOXN3O00409 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
FOXN3O00409 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXN3O00409 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms