Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 NOC2LP2-201ENST00000407594 1944 ntBASIC18.81■□□□□ 0.6
USP3Q9Y6I4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 TSPY19P-201ENST00000418461 509 ntBASIC18.81■□□□□ 0.6
USP3Q9Y6I4 TSPY18P-201ENST00000441642 509 ntBASIC18.81■□□□□ 0.6
USP3Q9Y6I4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 PRELID1P1-202ENST00000567272 903 ntBASIC18.81■□□□□ 0.6
USP3Q9Y6I4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP3Q9Y6I4 KRT8P47-201ENST00000604727 1398 ntBASIC18.81■□□□□ 0.6
USP3Q9Y6I4 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 POM121L3P-201ENST00000419331 1163 ntBASIC18.8■□□□□ 0.6
USP3Q9Y6I4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 AC099336.1-202ENST00000602961 463 ntBASIC18.8■□□□□ 0.6
USP3Q9Y6I4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP3Q9Y6I4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 AC097374.2-201ENST00000618617 1306 ntBASIC18.79■□□□□ 0.6
USP3Q9Y6I4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 AC008764.6-201ENST00000595909 2069 ntBASIC18.79■□□□□ 0.6
USP3Q9Y6I4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 FOSL1P1-201ENST00000511041 816 ntBASIC18.79■□□□□ 0.6
USP3Q9Y6I4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms