Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 NAPSB-206ENST00000562112 1266 ntBASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 AC010653.2-201ENST00000623505 997 ntBASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 AC036111.1-201ENST00000533973 1582 ntBASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
CCDC39Q9UFE4 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 AC066615.1-201ENST00000640911 628 ntBASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 AC093677.2-201ENST00000600169 1863 ntBASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC39Q9UFE4 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 AL596275.1-201ENST00000423464 877 ntBASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 CR769767.2-201ENST00000622735 460 ntBASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC39Q9UFE4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 NKILA-202ENST00000614771 2598 ntBASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 WWOX-216ENST00000569818 525 ntBASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms