Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 RCN1P2-201ENST00000398357 915 ntBASIC16■□□□□ 0.15
CLCF1Q9UBD9 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 MIR5100-201ENST00000579544 119 ntBASIC16■□□□□ 0.15
CLCF1Q9UBD9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 AL591684.3-201ENST00000605187 298 ntBASIC16■□□□□ 0.15
CLCF1Q9UBD9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLCF1Q9UBD9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16■□□□□ 0.15
CLCF1Q9UBD9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 KRT8P10-201ENST00000450021 1447 ntBASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CLCF1Q9UBD9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 FDX1P1-201ENST00000449115 551 ntBASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 AL160237.2-201ENST00000556165 472 ntBASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 AC011467.2-201ENST00000598425 242 ntBASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 AL121912.1-201ENST00000603683 238 ntBASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 AL138781.2-201ENST00000617896 1843 ntBASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLCF1Q9UBD9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLCF1Q9UBD9 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms