Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.95■□□□□ 0.14
MMP28Q9H239 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.95■□□□□ 0.14
MMP28Q9H239 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.95■□□□□ 0.14
MMP28Q9H239 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.95■□□□□ 0.14
MMP28Q9H239 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.95■□□□□ 0.14
MMP28Q9H239 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.95■□□□□ 0.14
MMP28Q9H239 AC233263.1-201ENST00000578059 224 ntBASIC15.95■□□□□ 0.14
MMP28Q9H239 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
MMP28Q9H239 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MMP28Q9H239 LINC02199-201ENST00000506655 2702 ntBASIC15.95■□□□□ 0.14
MMP28Q9H239 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 FLJ38576-201ENST00000623820 2459 ntBASIC15.94■□□□□ 0.14
MMP28Q9H239 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 PCDHA1-201ENST00000378133 2726 ntBASIC15.94■□□□□ 0.14
MMP28Q9H239 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
MMP28Q9H239 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 AL596275.1-201ENST00000423464 877 ntBASIC15.94■□□□□ 0.14
MMP28Q9H239 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15.94■□□□□ 0.14
MMP28Q9H239 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.94■□□□□ 0.14
MMP28Q9H239 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC15.94■□□□□ 0.14
MMP28Q9H239 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC15.94■□□□□ 0.14
MMP28Q9H239 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 AC105020.1-201ENST00000435356 2205 ntBASIC15.94■□□□□ 0.14
MMP28Q9H239 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.94■□□□□ 0.14
MMP28Q9H239 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
MMP28Q9H239 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MMP28Q9H239 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 NBPF21P-201ENST00000425093 1451 ntBASIC15.93■□□□□ 0.14
MMP28Q9H239 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 AC239809.2-201ENST00000415381 517 ntBASIC15.93■□□□□ 0.14
MMP28Q9H239 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.93■□□□□ 0.14
MMP28Q9H239 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.93■□□□□ 0.14
MMP28Q9H239 Six3os1_6.1-201ENST00000620790 196 ntBASIC15.93■□□□□ 0.14
MMP28Q9H239 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.93■□□□□ 0.14
MMP28Q9H239 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.93■□□□□ 0.14
MMP28Q9H239 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.93■□□□□ 0.14
MMP28Q9H239 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MMP28Q9H239 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms