Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 KRT17P2-201ENST00000300992 1314 ntBASIC10.78□□□□□ -0.68
LIMD2Q9BT23 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 AC090164.3-201ENST00000610780 2143 ntBASIC10.78□□□□□ -0.68
LIMD2Q9BT23 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LIMD2Q9BT23 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC10.77□□□□□ -0.68
LIMD2Q9BT23 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC10.77□□□□□ -0.68
LIMD2Q9BT23 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LIMD2Q9BT23 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LIMD2Q9BT23 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC10.77□□□□□ -0.68
LIMD2Q9BT23 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
LIMD2Q9BT23 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 CRYGFP-201ENST00000418459 633 ntBASIC10.77□□□□□ -0.69
LIMD2Q9BT23 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AC011506.1-201ENST00000474329 610 ntBASIC10.77□□□□□ -0.69
LIMD2Q9BT23 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AP005242.2-201ENST00000580065 1175 ntBASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 USP36-216ENST00000589424 970 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AC113410.3-201ENST00000623366 203 ntBASIC10.77□□□□□ -0.69
LIMD2Q9BT23 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 AL162727.3-201ENST00000635661 2787 ntBASIC10.77□□□□□ -0.69
LIMD2Q9BT23 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LIMD2Q9BT23 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 KRT8P45-201ENST00000414328 1447 ntBASIC10.76□□□□□ -0.69
LIMD2Q9BT23 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 WIZP1-201ENST00000531444 2299 ntBASIC10.76□□□□□ -0.69
LIMD2Q9BT23 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LIMD2Q9BT23 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC10.76□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms