Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GGTLC5P-201ENST00000617623 998 ntBASIC18.71■□□□□ 0.59
CDX2Q99626 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CDX2Q99626 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.71■□□□□ 0.59
CDX2Q99626 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDX2Q99626 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CDX2Q99626 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
CDX2Q99626 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX2Q99626 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CDX2Q99626 PTCHD3P3-201ENST00000403073 906 ntBASIC18.7■□□□□ 0.58
CDX2Q99626 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.7■□□□□ 0.58
CDX2Q99626 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.7■□□□□ 0.58
CDX2Q99626 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.7■□□□□ 0.58
CDX2Q99626 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.7■□□□□ 0.58
CDX2Q99626 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX2Q99626 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CDX2Q99626 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 AC010460.3-201ENST00000511359 1579 ntBASIC18.7■□□□□ 0.58
CDX2Q99626 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX2Q99626 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX2Q99626 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX2Q99626 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.7■□□□□ 0.58
CDX2Q99626 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CDX2Q99626 AC148477.5-201ENST00000625164 1645 ntBASIC18.7■□□□□ 0.58
CDX2Q99626 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDX2Q99626 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.7■□□□□ 0.58
CDX2Q99626 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CDX2Q99626 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CDX2Q99626 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX2Q99626 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX2Q99626 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 AC103564.2-201ENST00000432853 1299 ntBASIC18.69■□□□□ 0.58
CDX2Q99626 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 KRT17P7-201ENST00000451704 1104 ntBASIC18.69■□□□□ 0.58
CDX2Q99626 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX2Q99626 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX2Q99626 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX2Q99626 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.69■□□□□ 0.58
CDX2Q99626 AP001059.3-201ENST00000619053 235 ntBASIC18.69■□□□□ 0.58
CDX2Q99626 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDX2Q99626 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX2Q99626 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CDX2Q99626 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX2Q99626 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX2Q99626 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX2Q99626 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX2Q99626 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX2Q99626 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX2Q99626 PIN1P1-201ENST00000412108 996 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 SLC25A6P5-201ENST00000435663 894 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 U91328.1-201ENST00000437528 223 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.68■□□□□ 0.58
CDX2Q99626 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.68■□□□□ 0.58
CDX2Q99626 CXCL1P1-201ENST00000502804 216 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 KRT8P48-201ENST00000515599 1220 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.68■□□□□ 0.58
CDX2Q99626 AC140878.1-201ENST00000565277 250 ntBASIC18.68■□□□□ 0.58
CDX2Q99626 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX2Q99626 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX2Q99626 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms