Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 DDT-203ENST00000403754 569 ntTSL 3 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 DDT-206ENST00000430101 573 ntTSL 2 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 ATP5G2P1-201ENST00000433580 426 ntBASIC17■□□□□ 0.31
PTCHD1Q96NR3 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 GXYLT1P4-201ENST00000613576 1192 ntBASIC17■□□□□ 0.31
PTCHD1Q96NR3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 AC124864.1-201ENST00000623408 392 ntBASIC17■□□□□ 0.31
PTCHD1Q96NR3 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PTCHD1Q96NR3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PTCHD1Q96NR3 AC135776.1-201ENST00000319817 2481 ntBASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 HCG4P8-203ENST00000443049 980 ntBASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 AP002414.4-201ENST00000589764 1148 ntBASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 AC092119.3-201ENST00000612618 583 ntBASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 NPAP1P7-201ENST00000613027 823 ntBASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PTCHD1Q96NR3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 AP002383.4-201ENST00000442518 975 ntBASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 AC092329.2-201ENST00000598402 547 ntBASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 AL354751.1-201ENST00000412768 1863 ntBASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD1Q96NR3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms