Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 LIN28AP1-201ENST00000429574 405 ntBASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 FAM87A-204ENST00000613235 858 ntBASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 KRT18P55-202ENST00000578578 1546 ntBASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 SLC25A3P1-201ENST00000443844 931 ntBASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 AC093010.1-201ENST00000473625 1624 ntBASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.8■□□□□ 0.6
CCHCR1Q8TD31 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 ATP5G1P1-201ENST00000448724 379 ntBASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.79■□□□□ 0.6
CCHCR1Q8TD31 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 AC006116.8-202ENST00000587620 1550 ntBASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 AL137013.1-201ENST00000432946 1228 ntBASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.78■□□□□ 0.6
CCHCR1Q8TD31 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms