Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.73■□□□□ 0.59
CCDC89Q8N998 AC007663.1-201ENST00000438948 1240 ntBASIC18.73■□□□□ 0.59
CCDC89Q8N998 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 AC104390.1-201ENST00000555663 520 ntBASIC18.73■□□□□ 0.59
CCDC89Q8N998 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC89Q8N998 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC89Q8N998 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 AL645608.8-201ENST00000606034 2086 ntBASIC18.72■□□□□ 0.59
CCDC89Q8N998 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 LINC01126-201ENST00000623515 1646 ntBASIC18.72■□□□□ 0.59
CCDC89Q8N998 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.72■□□□□ 0.59
CCDC89Q8N998 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 MIR3180-4-201ENST00000582223 153 ntBASIC18.72■□□□□ 0.59
CCDC89Q8N998 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC89Q8N998 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC89Q8N998 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.71■□□□□ 0.59
CCDC89Q8N998 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 KRT17P2-201ENST00000300992 1314 ntBASIC18.71■□□□□ 0.59
CCDC89Q8N998 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC89Q8N998 AC139713.2-201ENST00000641328 2723 ntBASIC18.71■□□□□ 0.59
CCDC89Q8N998 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC89Q8N998 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC89Q8N998 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC89Q8N998 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
CCDC89Q8N998 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC89Q8N998 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC89Q8N998 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC89Q8N998 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC89Q8N998 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC89Q8N998 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC89Q8N998 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC89Q8N998 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms