Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
PTCHD3Q3KNS1 FZD10-202ENST00000539839 3282 ntBASIC17.64■□□□□ 0.42
PTCHD3Q3KNS1 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 AC069148.1-201ENST00000608741 768 ntBASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 AC079602.3-201ENST00000623931 403 ntBASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 LTB4R2-202ENST00000528054 3092 ntBASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTCHD3Q3KNS1 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 AL645929.1-201ENST00000420084 975 ntBASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 KRT18P56-201ENST00000507275 550 ntBASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PTCHD3Q3KNS1 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 AC008687.5-201ENST00000593746 558 ntBASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTCHD3Q3KNS1 AL391807.1-203ENST00000604392 2365 ntBASIC17.61■□□□□ 0.41
PTCHD3Q3KNS1 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD3Q3KNS1 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.61■□□□□ 0.41
PTCHD3Q3KNS1 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.61■□□□□ 0.41
PTCHD3Q3KNS1 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD3Q3KNS1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms