Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 KRT18P3-201ENST00000451602 1288 ntBASIC15.48■□□□□ 0.07
ABCA4P78363 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.48■□□□□ 0.07
ABCA4P78363 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA4P78363 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA4P78363 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA4P78363 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 AC004817.3-201ENST00000602957 2129 ntBASIC15.48■□□□□ 0.07
ABCA4P78363 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA4P78363 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA4P78363 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA4P78363 AC125634.1-201ENST00000438758 1403 ntBASIC15.47■□□□□ 0.07
ABCA4P78363 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.47■□□□□ 0.07
ABCA4P78363 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.47■□□□□ 0.07
ABCA4P78363 AL591424.1-201ENST00000442569 1213 ntBASIC15.47■□□□□ 0.07
ABCA4P78363 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.47■□□□□ 0.07
ABCA4P78363 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.47■□□□□ 0.07
ABCA4P78363 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.47■□□□□ 0.07
ABCA4P78363 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.47■□□□□ 0.07
ABCA4P78363 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
ABCA4P78363 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.47■□□□□ 0.07
ABCA4P78363 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
ABCA4P78363 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
ABCA4P78363 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.47■□□□□ 0.07
ABCA4P78363 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
ABCA4P78363 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.47■□□□□ 0.07
ABCA4P78363 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.47■□□□□ 0.07
ABCA4P78363 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
ABCA4P78363 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
ABCA4P78363 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 ESPNP-201ENST00000270691 2015 ntBASIC15.47■□□□□ 0.07
ABCA4P78363 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
ABCA4P78363 MYLKP1-201ENST00000509077 1580 ntBASIC15.47■□□□□ 0.07
ABCA4P78363 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA4P78363 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
ABCA4P78363 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC15.46■□□□□ 0.07
ABCA4P78363 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC15.46■□□□□ 0.07
ABCA4P78363 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.46■□□□□ 0.07
ABCA4P78363 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.46■□□□□ 0.07
ABCA4P78363 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.46■□□□□ 0.07
ABCA4P78363 AC011467.2-201ENST00000598425 242 ntBASIC15.46■□□□□ 0.07
ABCA4P78363 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.46■□□□□ 0.07
ABCA4P78363 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.46■□□□□ 0.07
ABCA4P78363 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
ABCA4P78363 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
ABCA4P78363 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
ABCA4P78363 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.46■□□□□ 0.07
ABCA4P78363 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
ABCA4P78363 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.06
ABCA4P78363 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC15.46■□□□□ 0.06
ABCA4P78363 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.46■□□□□ 0.06
ABCA4P78363 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
ABCA4P78363 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
ABCA4P78363 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
ABCA4P78363 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
ABCA4P78363 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
ABCA4P78363 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
ABCA4P78363 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.45■□□□□ 0.06
ABCA4P78363 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.45■□□□□ 0.06
ABCA4P78363 NKAPP1-205ENST00000585790 367 ntBASIC15.45■□□□□ 0.06
ABCA4P78363 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.45■□□□□ 0.06
ABCA4P78363 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
ABCA4P78363 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
ABCA4P78363 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms