Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RPL39P62891 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RPL39P62891 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC12.78□□□□□ -0.36
RPL39P62891 KRT8P50-201ENST00000562022 1438 ntBASIC12.78□□□□□ -0.36
RPL39P62891 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RPL39P62891 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC12.78□□□□□ -0.36
RPL39P62891 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RPL39P62891 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC12.78□□□□□ -0.36
RPL39P62891 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
RPL39P62891 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RPL39P62891 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
RPL39P62891 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC12.77□□□□□ -0.36
RPL39P62891 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RPL39P62891 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 MIR564-202ENST00000385049 94 ntBASIC12.77□□□□□ -0.37
RPL39P62891 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 NCF1B-203ENST00000435988 1254 ntBASIC12.77□□□□□ -0.37
RPL39P62891 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC12.77□□□□□ -0.37
RPL39P62891 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC12.77□□□□□ -0.37
RPL39P62891 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
RPL39P62891 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
RPL39P62891 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC12.77□□□□□ -0.37
RPL39P62891 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
RPL39P62891 AL118508.1-201ENST00000613502 2345 ntBASIC12.77□□□□□ -0.37
RPL39P62891 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC12.77□□□□□ -0.37
RPL39P62891 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RPL39P62891 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 CROCCP2-202ENST00000412962 2773 ntBASIC12.76□□□□□ -0.37
RPL39P62891 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 BOC-212ENST00000485230 2173 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
RPL39P62891 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC12.76□□□□□ -0.37
RPL39P62891 AC004951.3-201ENST00000418645 1148 ntBASIC12.76□□□□□ -0.37
RPL39P62891 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 CKBP1-201ENST00000565489 1086 ntBASIC12.76□□□□□ -0.37
RPL39P62891 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 MTDHP1-201ENST00000605323 784 ntBASIC12.76□□□□□ -0.37
RPL39P62891 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
RPL39P62891 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
RPL39P62891 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC12.76□□□□□ -0.37
RPL39P62891 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
RPL39P62891 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms