Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 NKILA-202ENST00000614771 2598 ntBASIC12.66□□□□□ -0.38
CKS1BP61024 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CKS1BP61024 CD276-203ENST00000537340 2439 ntTSL 2 BASIC12.66□□□□□ -0.38
CKS1BP61024 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC12.66□□□□□ -0.38
CKS1BP61024 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CKS1BP61024 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 COBL-210ENST00000632460 1941 ntTSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
CKS1BP61024 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC12.65□□□□□ -0.38
CKS1BP61024 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 TSPY21P-201ENST00000433481 731 ntBASIC12.65□□□□□ -0.38
CKS1BP61024 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC12.65□□□□□ -0.38
CKS1BP61024 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 AL162430.1-201ENST00000480705 870 ntBASIC12.65□□□□□ -0.38
CKS1BP61024 KRT18P16-201ENST00000510337 1294 ntBASIC12.65□□□□□ -0.38
CKS1BP61024 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 RARRES2P6-201ENST00000567333 442 ntBASIC12.65□□□□□ -0.38
CKS1BP61024 AC011676.5-201ENST00000624864 2660 ntBASIC12.65□□□□□ -0.38
CKS1BP61024 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 MIR600HG-201ENST00000449175 5984 ntBASIC12.65□□□□□ -0.38
CKS1BP61024 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
CKS1BP61024 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC12.65□□□□□ -0.38
CKS1BP61024 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CKS1BP61024 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.65□□□□□ -0.38
CKS1BP61024 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
CKS1BP61024 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CKS1BP61024 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
CKS1BP61024 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CKS1BP61024 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CKS1BP61024 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC12.64□□□□□ -0.39
CKS1BP61024 MIR663A-201ENST00000385250 93 ntBASIC12.64□□□□□ -0.39
CKS1BP61024 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC12.64□□□□□ -0.39
CKS1BP61024 SLC29A4P1-201ENST00000398760 971 ntBASIC12.64□□□□□ -0.39
CKS1BP61024 MIPEPP3-201ENST00000412105 444 ntBASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms