Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CDH4P55283 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 FLJ13224-201ENST00000313737 1514 ntBASIC18.4■□□□□ 0.54
CDH4P55283 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.4■□□□□ 0.54
CDH4P55283 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CDH4P55283 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDH4P55283 MINOS1P3-201ENST00000457048 203 ntBASIC18.4■□□□□ 0.54
CDH4P55283 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.4■□□□□ 0.54
CDH4P55283 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CDH4P55283 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDH4P55283 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CDH4P55283 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.4■□□□□ 0.54
CDH4P55283 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CDH4P55283 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDH4P55283 AC135050.7-201ENST00000624508 2218 ntBASIC18.39■□□□□ 0.54
CDH4P55283 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
CDH4P55283 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH4P55283 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CDH4P55283 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 RNF165-205ENST00000588679 2904 ntBASIC18.39■□□□□ 0.53
CDH4P55283 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH4P55283 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CDH4P55283 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.39■□□□□ 0.53
CDH4P55283 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.39■□□□□ 0.53
CDH4P55283 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.39■□□□□ 0.53
CDH4P55283 AC099336.1-202ENST00000602961 463 ntBASIC18.39■□□□□ 0.53
CDH4P55283 AL138831.2-201ENST00000606564 490 ntBASIC18.39■□□□□ 0.53
CDH4P55283 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH4P55283 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH4P55283 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 AC125634.1-201ENST00000438758 1403 ntBASIC18.39■□□□□ 0.53
CDH4P55283 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH4P55283 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CDH4P55283 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH4P55283 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH4P55283 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CDH4P55283 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH4P55283 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH4P55283 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 AL354751.1-201ENST00000412768 1863 ntBASIC18.38■□□□□ 0.53
CDH4P55283 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH4P55283 DUSP5P1-201ENST00000441325 1139 ntBASIC18.38■□□□□ 0.53
CDH4P55283 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.38■□□□□ 0.53
CDH4P55283 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.38■□□□□ 0.53
CDH4P55283 AC012313.10-201ENST00000623509 926 ntBASIC18.38■□□□□ 0.53
CDH4P55283 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDH4P55283 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CDH4P55283 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDH4P55283 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH4P55283 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms