Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H2P55055 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H2P55055 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.13■□□□□ 0.33
NR1H2P55055 KSR1P1-201ENST00000446298 240 ntBASIC17.13■□□□□ 0.33
NR1H2P55055 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.13■□□□□ 0.33
NR1H2P55055 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.13■□□□□ 0.33
NR1H2P55055 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NR1H2P55055 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.13■□□□□ 0.33
NR1H2P55055 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.13■□□□□ 0.33
NR1H2P55055 AL513477.1-201ENST00000602865 2407 ntBASIC17.13■□□□□ 0.33
NR1H2P55055 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.13■□□□□ 0.33
NR1H2P55055 MST1L-201ENST00000442552 2185 ntBASIC17.13■□□□□ 0.33
NR1H2P55055 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NR1H2P55055 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H2P55055 PCDH8P1-201ENST00000428983 2773 ntBASIC17.13■□□□□ 0.33
NR1H2P55055 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.13■□□□□ 0.33
NR1H2P55055 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
NR1H2P55055 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
NR1H2P55055 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H2P55055 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.13■□□□□ 0.33
NR1H2P55055 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 AP006587.1-201ENST00000534129 1502 ntBASIC17.12■□□□□ 0.33
NR1H2P55055 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 UBALD1-205ENST00000590891 2641 ntBASIC17.12■□□□□ 0.33
NR1H2P55055 AC116351.2-201ENST00000606540 1585 ntBASIC17.12■□□□□ 0.33
NR1H2P55055 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
NR1H2P55055 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.12■□□□□ 0.33
NR1H2P55055 NUDT16P1-203ENST00000513809 620 ntBASIC17.12■□□□□ 0.33
NR1H2P55055 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.12■□□□□ 0.33
NR1H2P55055 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H2P55055 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.12■□□□□ 0.33
NR1H2P55055 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H2P55055 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H2P55055 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NR1H2P55055 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H2P55055 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NR1H2P55055 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.11■□□□□ 0.33
NR1H2P55055 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.11■□□□□ 0.33
NR1H2P55055 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.11■□□□□ 0.33
NR1H2P55055 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.11■□□□□ 0.33
NR1H2P55055 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.11■□□□□ 0.33
NR1H2P55055 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 MMP23A-201ENST00000234610 1017 ntBASIC17.11■□□□□ 0.33
NR1H2P55055 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.11■□□□□ 0.33
NR1H2P55055 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
NR1H2P55055 NIFKP9-201ENST00000419265 221 ntBASIC17.11■□□□□ 0.33
NR1H2P55055 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.11■□□□□ 0.33
NR1H2P55055 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.11■□□□□ 0.33
NR1H2P55055 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.11■□□□□ 0.33
NR1H2P55055 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.11■□□□□ 0.33
NR1H2P55055 AC097493.4-201ENST00000641197 219 ntBASIC17.11■□□□□ 0.33
NR1H2P55055 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 PCDHB19P-201ENST00000570871 2371 ntBASIC17.11■□□□□ 0.33
NR1H2P55055 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NR1H2P55055 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NR1H2P55055 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NR1H2P55055 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NR1H2P55055 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.11■□□□□ 0.33
NR1H2P55055 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NR1H2P55055 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
NR1H2P55055 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms