Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL499627.1-201ENST00000569373 2188 ntBASIC17.88■□□□□ 0.45
CXCL12P48061 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL12P48061 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.88■□□□□ 0.45
CXCL12P48061 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.88■□□□□ 0.45
CXCL12P48061 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CXCL12P48061 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CXCL12P48061 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.88■□□□□ 0.45
CXCL12P48061 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CXCL12P48061 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 AL049812.1-201ENST00000432563 2267 ntBASIC17.87■□□□□ 0.45
CXCL12P48061 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 FAM8A3P-201ENST00000427218 844 ntBASIC17.87■□□□□ 0.45
CXCL12P48061 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.87■□□□□ 0.45
CXCL12P48061 AC004706.3-202ENST00000621574 984 ntBASIC17.87■□□□□ 0.45
CXCL12P48061 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.87■□□□□ 0.45
CXCL12P48061 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 KRT8P47-201ENST00000604727 1398 ntBASIC17.87■□□□□ 0.45
CXCL12P48061 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CXCL12P48061 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.87■□□□□ 0.45
CXCL12P48061 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CXCL12P48061 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.86■□□□□ 0.45
CXCL12P48061 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.86■□□□□ 0.45
CXCL12P48061 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 CEND1P1-201ENST00000451006 455 ntBASIC17.86■□□□□ 0.45
CXCL12P48061 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.86■□□□□ 0.45
CXCL12P48061 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.86■□□□□ 0.45
CXCL12P48061 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.86■□□□□ 0.45
CXCL12P48061 AC018845.2-201ENST00000568326 409 ntBASIC17.86■□□□□ 0.45
CXCL12P48061 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 AC073592.5-201ENST00000624854 528 ntBASIC17.86■□□□□ 0.45
CXCL12P48061 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CXCL12P48061 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
CXCL12P48061 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CXCL12P48061 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
CXCL12P48061 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CXCL12P48061 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CXCL12P48061 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 ELL2P1-201ENST00000413990 1906 ntBASIC17.85■□□□□ 0.45
CXCL12P48061 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.85■□□□□ 0.45
CXCL12P48061 AL020989.1-201ENST00000422979 469 ntBASIC17.85■□□□□ 0.45
CXCL12P48061 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
CXCL12P48061 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.85■□□□□ 0.45
CXCL12P48061 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.85■□□□□ 0.45
CXCL12P48061 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms