Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.15■□□□□ 0.82
HTTP42858 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.15■□□□□ 0.82
HTTP42858 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.15■□□□□ 0.82
HTTP42858 AC051619.7-201ENST00000568314 623 ntBASIC20.15■□□□□ 0.82
HTTP42858 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
HTTP42858 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.15■□□□□ 0.82
HTTP42858 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
HTTP42858 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HTTP42858 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HTTP42858 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC20.15■□□□□ 0.82
HTTP42858 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC20.15■□□□□ 0.82
HTTP42858 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
HTTP42858 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
HTTP42858 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
HTTP42858 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
HTTP42858 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.82
HTTP42858 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.14■□□□□ 0.82
HTTP42858 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
HTTP42858 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.14■□□□□ 0.82
HTTP42858 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.14■□□□□ 0.82
HTTP42858 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.14■□□□□ 0.82
HTTP42858 AC008687.5-201ENST00000593746 558 ntBASIC20.14■□□□□ 0.82
HTTP42858 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
HTTP42858 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.14■□□□□ 0.82
HTTP42858 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HTTP42858 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.14■□□□□ 0.81
HTTP42858 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.14■□□□□ 0.81
HTTP42858 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.14■□□□□ 0.81
HTTP42858 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.14■□□□□ 0.81
HTTP42858 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HTTP42858 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.14■□□□□ 0.81
HTTP42858 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HTTP42858 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.14■□□□□ 0.81
HTTP42858 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.14■□□□□ 0.81
HTTP42858 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.13■□□□□ 0.81
HTTP42858 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC20.13■□□□□ 0.81
HTTP42858 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.13■□□□□ 0.81
HTTP42858 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.13■□□□□ 0.81
HTTP42858 AC093484.2-201ENST00000580996 2166 ntBASIC20.13■□□□□ 0.81
HTTP42858 AC132938.5-201ENST00000624980 1813 ntBASIC20.13■□□□□ 0.81
HTTP42858 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 AC236430.1-201ENST00000402231 743 ntBASIC20.13■□□□□ 0.81
HTTP42858 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.13■□□□□ 0.81
HTTP42858 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
HTTP42858 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.13■□□□□ 0.81
HTTP42858 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
HTTP42858 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.13■□□□□ 0.81
HTTP42858 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.13■□□□□ 0.81
HTTP42858 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HTTP42858 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
HTTP42858 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.12■□□□□ 0.81
HTTP42858 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.12■□□□□ 0.81
HTTP42858 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HTTP42858 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.12■□□□□ 0.81
HTTP42858 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.12■□□□□ 0.81
HTTP42858 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.12■□□□□ 0.81
HTTP42858 POLD4-211ENST00000539074 714 ntTSL 3 BASIC20.12■□□□□ 0.81
HTTP42858 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC20.12■□□□□ 0.81
HTTP42858 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HTTP42858 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.12■□□□□ 0.81
HTTP42858 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.11■□□□□ 0.81
HTTP42858 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HTTP42858 PGM5P2-202ENST00000637225 1043 ntBASIC20.11■□□□□ 0.81
HTTP42858 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HTTP42858 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.11■□□□□ 0.81
HTTP42858 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HTTP42858 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HTTP42858 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HTTP42858 ACTG1P14-201ENST00000446382 1122 ntBASIC20.11■□□□□ 0.81
HTTP42858 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HTTP42858 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HTTP42858 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HTTP42858 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms